Title | Rare variant associations with waist-to-hip ratio in European-American and African-American women from the NHLBI-Exome Sequencing Project. |
Publication Type | Journal Article |
Year of Publication | 2016 |
Authors | Kan M, Auer PL, Wang GT, Bucasas KL, Hooker S, Rodriguez A, Li B, Ellis J, L Cupples A, Chen Y-DIda, Dupuis J, Fox CS, Gross MD, Smith JD, Heard-Costa N, Meigs JB, Pankow JS, Rotter JI, Siscovick D, Wilson JG, Shendure J, Jackson R, Peters U, Zhong H, Lin D, Hsu L, Franceschini N, Carlson C, Abecasis G, Gabriel S, Bamshad MJ, Altshuler D, Nickerson DA, North KE, Lange LA, Reiner AP |
Secondary Authors | Leal SM |
Corporate Authors | NHLBI-Exome Sequencing Project |
Journal | Eur J Hum Genet |
Volume | 24 |
Issue | 8 |
Pagination | 1181-7 |
Date Published | 2016 08 |
ISSN | 1476-5438 |
Keywords | Adult, African Americans, Aged, Aged, 80 and over, Alleles, European Continental Ancestry Group, Exome, Female, Humans, I-kappa B Kinase, Middle Aged, Polymorphism, Genetic, Transcription Factors, Waist-Hip Ratio |
Abstract | Waist-to-hip ratio (WHR), a relative comparison of waist and hip circumferences, is an easily accessible measurement of body fat distribution, in particular central abdominal fat. A high WHR indicates more intra-abdominal fat deposition and is an established risk factor for cardiovascular disease and type 2 diabetes. Recent genome-wide association studies have identified numerous common genetic loci influencing WHR, but the contributions of rare variants have not been previously reported. We investigated rare variant associations with WHR in 1510 European-American and 1186 African-American women from the National Heart, Lung, and Blood Institute-Exome Sequencing Project. Association analysis was performed on the gene level using several rare variant association methods. The strongest association was observed for rare variants in IKBKB (P=4.0 × 10(-8)) in European-Americans, where rare variants in this gene are predicted to decrease WHRs. The activation of the IKBKB gene is involved in inflammatory processes and insulin resistance, which may affect normal food intake and body weight and shape. Meanwhile, aggregation of rare variants in COBLL1, previously found to harbor common variants associated with WHR and fasting insulin, were nominally associated (P=2.23 × 10(-4)) with higher WHR in European-Americans. However, these significant results are not shared between African-Americans and European-Americans that may be due to differences in the allelic architecture of the two populations and the small sample sizes. Our study indicates that the combined effect of rare variants contribute to the inter-individual variation in fat distribution through the regulation of insulin response. |
DOI | 10.1038/ejhg.2015.272 |
Alternate Journal | Eur J Hum Genet |
PubMed ID | 26757982 |
PubMed Central ID | PMC4970686 |
Grant List | R01 CA082659 / CA / NCI NIH HHS / United States UL1 TR001070 / TR / NCATS NIH HHS / United States R01 DK078616 / DK / NIDDK NIH HHS / United States RC2 HL102923 / HL / NHLBI NIH HHS / United States R01 HL053560 / HL / NHLBI NIH HHS / United States RC2 HL102926 / HL / NHLBI NIH HHS / United States UL1 TR000124 / TR / NCATS NIH HHS / United States P30 DK063491 / DK / NIDDK NIH HHS / United States RC2 HL102924 / HL / NHLBI NIH HHS / United States K24 DK080140 / DK / NIDDK NIH HHS / United States U01 DK078616 / DK / NIDDK NIH HHS / United States R01 DK089256 / DK / NIDDK NIH HHS / United States RC2 HL103010 / HL / NHLBI NIH HHS / United States T32 GM008307 / GM / NIGMS NIH HHS / United States RC2 HL102925 / HL / NHLBI NIH HHS / United States |