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Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.

TitleDiscovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.
Publication TypeJournal Article
Year of Publication2018
AuthorsKocarnik JM, Richard M, Graff M, Haessler J, Bien S, Carlson C, Carty CL, Reiner AP, Avery CL, Ballantyne CM, LaCroix AZ, Assimes TL, Barbalic M, Pankratz N, Tang W, Tao R, Chen D, Talavera GA, Daviglus ML, Chirinos-Medina DA, Pereira R, Nishimura K, Bůžková P, Best LG, Ambite JLuis, Cheng I, Crawford DC, Hindorff LA, Fornage M, Heiss G, North KE, Haiman CA, Peters U, Le Marchand L
Secondary AuthorsKooperberg C
JournalHum Mol Genet
Volume27
Issue16
Pagination2940-2953
Date Published2018 08 15
ISSN1460-2083
KeywordsC-Reactive Protein, Enoyl-CoA Hydratase, European Continental Ancestry Group, Female, Genome-Wide Association Study, Glycoproteins, Group VI Phospholipases A2, Humans, Linkage Disequilibrium, Male, Metagenomics, Molecular Epidemiology, Polymorphism, Single Nucleotide
Abstract

C-reactive protein (CRP) is a circulating biomarker indicative of systemic inflammation. We aimed to evaluate genetic associations with CRP levels among non-European-ancestry populations through discovery, fine-mapping and conditional analyses. A total of 30 503 non-European-ancestry participants from 6 studies participating in the Population Architecture using Genomics and Epidemiology study had serum high-sensitivity CRP measurements and ∼200 000 single nucleotide polymorphisms (SNPs) genotyped on the Metabochip. We evaluated the association between each SNP and log-transformed CRP levels using multivariate linear regression, with additive genetic models adjusted for age, sex, the first four principal components of genetic ancestry, and study-specific factors. Differential linkage disequilibrium patterns between race/ethnicity groups were used to fine-map regions associated with CRP levels. Conditional analyses evaluated for multiple independent signals within genetic regions. One hundred and sixty-three unique variants in 12 loci in overall or race/ethnicity-stratified Metabochip-wide scans reached a Bonferroni-corrected P-value 

DOI10.1093/hmg/ddy211
Alternate JournalHum Mol Genet
PubMed ID29878111
PubMed Central IDPMC6077792
Grant ListU01 HL130114 / HL / NHLBI NIH HHS / United States
KL2 TR002317 / TR / NCATS NIH HHS / United States
S10 OD020069 / OD / NIH HHS / United States
U01 HG007376 / HG / NHGRI NIH HHS / United States
P30 CA013148 / CA / NCI NIH HHS / United States
/ RA / ARRA NIH HHS / United States