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The trans-ancestral genomic architecture of glycemic traits.

TitleThe trans-ancestral genomic architecture of glycemic traits.
Publication TypeJournal Article
Year of Publication2021
AuthorsChen J, Spracklen CN, Marenne G, et al.
Corporate AuthorsLifeLines Cohort Study, Meta-Analysis of Glucose and Insulin-related Traits Consortium(MAGIC)
JournalNat Genet
Volume53
Issue6
Pagination840-860
Date Published2021 06
ISSN1546-1718
KeywordsAlleles, Blood Glucose, Epigenesis, Genetic, European Continental Ancestry Group, Gene Expression Profiling, Genome, Human, Genome-Wide Association Study, Glycated Hemoglobin A, Humans, Multifactorial Inheritance, Physical Chromosome Mapping, Quantitative Trait Loci, Quantitative Trait, Heritable
Abstract

Glycemic traits are used to diagnose and monitor type 2 diabetes and cardiometabolic health. To date, most genetic studies of glycemic traits have focused on individuals of European ancestry. Here we aggregated genome-wide association studies comprising up to 281,416 individuals without diabetes (30% non-European ancestry) for whom fasting glucose, 2-h glucose after an oral glucose challenge, glycated hemoglobin and fasting insulin data were available. Trans-ancestry and single-ancestry meta-analyses identified 242 loci (99 novel; P < 5 × 10), 80% of which had no significant evidence of between-ancestry heterogeneity. Analyses restricted to individuals of European ancestry with equivalent sample size would have led to 24 fewer new loci. Compared with single-ancestry analyses, equivalent-sized trans-ancestry fine-mapping reduced the number of estimated variants in 99% credible sets by a median of 37.5%. Genomic-feature, gene-expression and gene-set analyses revealed distinct biological signatures for each trait, highlighting different underlying biological pathways. Our results increase our understanding of diabetes pathophysiology by using trans-ancestry studies for improved power and resolution.

DOI10.1038/s41588-021-00852-9
Alternate JournalNat Genet
PubMed ID34059833
PubMed Central IDPMC7610958
Grant ListD43 TW009077 / TW / FIC NIH HHS / United States
U24 MH068457 / MH / NIMH NIH HHS / United States
RP-PG-0407-10371 / DH_ / Department of Health / United Kingdom
MC_UU_00006/1 / MRC_ / Medical Research Council / United Kingdom
K013351 / MRC_ / Medical Research Council / United Kingdom
G0601966 / MRC_ / Medical Research Council / United Kingdom
CZB/4/710 / CSO_ / Chief Scientist Office / United Kingdom
N01HC85080 / HL / NHLBI NIH HHS / United States
MC_UU_12019/1 / MRC_ / Medical Research Council / United Kingdom
N01AG12109 / AG / NIA NIH HHS / United States
N01HC95169 / HL / NHLBI NIH HHS / United States
R01 HL088119 / HL / NHLBI NIH HHS / United States
U01 DK085545 / DK / NIDDK NIH HHS / United States
N01HC65236 / HL / NHLBI NIH HHS / United States
G952010 / MRC_ / Medical Research Council / United Kingdom
UM1 CA173640 / CA / NCI NIH HHS / United States
R01 HL086694 / HL / NHLBI NIH HHS / United States
MC_PC_U127592696 / MRC_ / Medical Research Council / United Kingdom
HHSN268201300005C / HL / NHLBI NIH HHS / United States
16/136/68 / DH_ / Department of Health / United Kingdom
06130 / WT_ / Wellcome Trust / United Kingdom
PG/11/63/29011 / BHF_ / British Heart Foundation / United Kingdom
P01 HL136275 / HL / NHLBI NIH HHS / United States
R01 AG023629 / AG / NIA NIH HHS / United States
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RG/16/11/32334 / BHF_ / British Heart Foundation / United Kingdom
MR/M013138/1 / MRC_ / Medical Research Council / United Kingdom
UL1 TR001881 / TR / NCATS NIH HHS / United States
104036/Z/14/Z / WT_ / Wellcome Trust / United Kingdom
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SP/04/002 / BHF_ / British Heart Foundation / United Kingdom
R01 HL120393 / HL / NHLBI NIH HHS / United States
MOP-82893 / / CIHR / Canada
200837 / WT_ / Wellcome Trust / United Kingdom
HHSN268201200036C / HL / NHLBI NIH HHS / United States
090532 / WT_ / Wellcome Trust / United Kingdom
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HHSN268201700001I / HL / NHLBI NIH HHS / United States
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CZD/16/6 / CSO_ / Chief Scientist Office / United Kingdom
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BRC-1215-20011 / DH_ / Department of Health / United Kingdom
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SP/07/008/24066 / BHF_ / British Heart Foundation / United Kingdom
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HHSN268200800007C / HL / NHLBI NIH HHS / United States
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MR/S03658X/1 / MRC_ / Medical Research Council / United Kingdom
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WT064890 / WT_ / Wellcome Trust / United Kingdom
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202802/Z/16/Z / WT_ / Wellcome Trust / United Kingdom
RG2008/014 / BHF_ / British Heart Foundation / United Kingdom
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