Title | The trans-ancestral genomic architecture of glycemic traits. |
Publication Type | Journal Article |
Year of Publication | 2021 |
Authors | Chen J, Spracklen CN, Marenne G, et al. |
Corporate Authors | LifeLines Cohort Study, Meta-Analysis of Glucose and Insulin-related Traits Consortium(MAGIC) |
Journal | Nat Genet |
Volume | 53 |
Issue | 6 |
Pagination | 840-860 |
Date Published | 2021 06 |
ISSN | 1546-1718 |
Keywords | Alleles, Blood Glucose, Epigenesis, Genetic, European Continental Ancestry Group, Gene Expression Profiling, Genome, Human, Genome-Wide Association Study, Glycated Hemoglobin A, Humans, Multifactorial Inheritance, Physical Chromosome Mapping, Quantitative Trait Loci, Quantitative Trait, Heritable |
Abstract | Glycemic traits are used to diagnose and monitor type 2 diabetes and cardiometabolic health. To date, most genetic studies of glycemic traits have focused on individuals of European ancestry. Here we aggregated genome-wide association studies comprising up to 281,416 individuals without diabetes (30% non-European ancestry) for whom fasting glucose, 2-h glucose after an oral glucose challenge, glycated hemoglobin and fasting insulin data were available. Trans-ancestry and single-ancestry meta-analyses identified 242 loci (99 novel; P < 5 × 10), 80% of which had no significant evidence of between-ancestry heterogeneity. Analyses restricted to individuals of European ancestry with equivalent sample size would have led to 24 fewer new loci. Compared with single-ancestry analyses, equivalent-sized trans-ancestry fine-mapping reduced the number of estimated variants in 99% credible sets by a median of 37.5%. Genomic-feature, gene-expression and gene-set analyses revealed distinct biological signatures for each trait, highlighting different underlying biological pathways. Our results increase our understanding of diabetes pathophysiology by using trans-ancestry studies for improved power and resolution. |
DOI | 10.1038/s41588-021-00852-9 |
Alternate Journal | Nat Genet |
PubMed ID | 34059833 |
PubMed Central ID | PMC7610958 |
Grant List | D43 TW009077 / TW / FIC NIH HHS / United States U24 MH068457 / MH / NIMH NIH HHS / United States RP-PG-0407-10371 / DH_ / Department of Health / United Kingdom MC_UU_00006/1 / MRC_ / Medical Research Council / United Kingdom K013351 / MRC_ / Medical Research Council / United Kingdom G0601966 / MRC_ / Medical Research Council / United Kingdom CZB/4/710 / CSO_ / Chief Scientist Office / United Kingdom N01HC85080 / HL / NHLBI NIH HHS / United States MC_UU_12019/1 / MRC_ / Medical Research Council / United Kingdom N01AG12109 / AG / NIA NIH HHS / United States N01HC95169 / HL / NHLBI NIH HHS / United States R01 HL088119 / HL / NHLBI NIH HHS / United States U01 DK085545 / DK / NIDDK NIH HHS / United States N01HC65236 / HL / NHLBI NIH HHS / United States G952010 / MRC_ / Medical Research Council / United Kingdom UM1 CA173640 / CA / NCI NIH HHS / United States R01 HL086694 / HL / NHLBI NIH HHS / United States MC_PC_U127592696 / MRC_ / Medical Research Council / United Kingdom HHSN268201300005C / HL / NHLBI NIH HHS / United States 16/136/68 / DH_ / Department of Health / United Kingdom 06130 / WT_ / Wellcome Trust / United Kingdom PG/11/63/29011 / BHF_ / British Heart Foundation / United Kingdom P01 HL136275 / HL / NHLBI NIH HHS / United States R01 AG023629 / AG / NIA NIH HHS / United States T32 GM067553 / GM / NIGMS NIH HHS / United States R01 DK072193 / DK / NIDDK NIH HHS / United States T32 HL007024 / HL / NHLBI NIH HHS / United States HHSN268201800001C / HL / NHLBI NIH HHS / United States U01 HL080295 / HL / NHLBI NIH HHS / United States N01HC95161 / HL / NHLBI NIH HHS / United States RG/16/11/32334 / BHF_ / British Heart Foundation / United Kingdom MR/M013138/1 / MRC_ / Medical Research Council / United Kingdom UL1 TR001881 / TR / NCATS NIH HHS / United States 104036/Z/14/Z / WT_ / Wellcome Trust / United Kingdom 75N92019D00031 / HL / NHLBI NIH HHS / United States SP/04/002 / BHF_ / British Heart Foundation / United Kingdom R01 HL120393 / HL / NHLBI NIH 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